Statistical Comparative Study of Multiple Sequence Alignment Scores of Iterative Refinement Algorithms
نویسندگان
چکیده
منابع مشابه
Evaluation of iterative alignment algorithms for multiple alignment
MOTIVATION Iteration has been used a number of times as an optimization method to produce multiple alignments, either alone or in combination with other methods. Iteration has a great advantage in that it is often very simple both in terms of coding the algorithms and the complexity of the time and memory requirements. In this paper, we systematically test several different iteration strategies...
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15 صفحه اولUniversit at Bielefeld Forschungsschwerpunkt Mathematisierung | Strukturbildungsprozesse on Simultaneous versus Iterative Multiple Sequence Alignment on Simultaneous versus Iterative Multiple Sequence Alignment
One of the main problems in computational biology is the construction of biologically plausible alignments for given sequence families. Many procedures have been developed for this purpose; most are based on clustering the sequences hierarchically prior to the computation of their alignment and then proceeding recursively. In this paper, we compare results obtained with a new algorithm for simu...
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ژورنال
عنوان ژورنال: IPSJ Transactions on Bioinformatics
سال: 2009
ISSN: 1882-6679
DOI: 10.2197/ipsjtbio.2.74